Bioinformatics MSc

Perl for Bioinformatics

For Perl for Bioinformatics 2011 please see the PBL WIKI at https://www.wiki.ed.ac.uk/display/pbl

Building a Bioinformatics Workstation

For BBW 2011-12 please see webCT

Next Generation Genomics

Handbook 2011-2012

Lecture Notes

[the following lecture notes are the 2010-2011 versions unless explicitly described as otherwise - they will be updated during the course; notes will be made here if they are...]

Lecture 1 Technologies 2012 PDF (large) version without so many pretty pictures PDF (smaller)

Lecture 2 Mapping 1 2012 PDF

Lecture 3 Mapping 2 2012 PDF

Lecture 4 Mapping 3 2012 PDF The SAM/BAM file format definition v1.4 PDF

Lecture 5 Assembly 1 2012 PDF

Lecture 6 Assembly 2 2012 PDF

Lecture 7 Assembly 3 2012 PDF [this will not all get done in Lecture 7...]

Lecture 8 Assembly 4 2012 PDF

Practical Workshops

Workshop 1 Mapping (DOCX DOC PDF) (2012 version) (Slides describing VCF format PDF)

Workshop 2 Assembly (2011-2012 version)

 

Third generation Talks

Complete Genomics

Oxford Nanopore

Ion Torrent

NextGeneration Bioinformatics User Group http://genepool.bio.ed.ac.uk/nextgenbug/

Intro to UNIX