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A tool for generating partial genomes
trace2seq
Turning sequence chromatograph traces into sequences.
Current version 1.0.1 released on 17 April 2008
trace2seq process raw sequencing chromatograph trace files into quality-checked sequences. trace2seq is a PERL script, designed to be run friom the command line. It has nbeen tested on Linux and Mac OSX computers. It is derived from our trace2dbEST EST processing tool.
trace2seq makes use of other software
(available free under academic licence) that you will need to have installed, namely phred and cross_match.
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Website Highlight
The filarial nematode Litomosoides sigmodontis.
Filarial nematodes are tissue and gut parasites of a wide range of vertebrates, including humans. This species is a rodent model for species, such as O. volvulus, that cause human diseases, affecting over 120 million people. See NEMBASE4 for analyses of ESTs from this parasite and many other nematodes.
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