Acrobeles complexus

nematodes.org - Bioinformatics

Nematode & Neglected Genomics
@ The Blaxter Lab, Institute of Evolutionary Biology, School of Biological Sciences, The University of Edinburgh

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partigene

A tool for generating partial genomes

annot8r

A tool for Gene Ontology, KEGG biochemical pathways and Enzyme Commission EC number annotation of nucleotide and peptide sequences

Ralf Schmid and Mark Blaxter

Current version 1.1.1 released on 06 October 2008

User guide Download Feedback Contact us

annot8r is a tool for the annotation of protein or nucleotide sequences from non model organisms with GO terms, EC numbers and KEGG pathways. The annotation is based on BLAST similarity searches against annotated subsets of EMBL UniProt from which sequences with non-informative entries have been removed. GO, EC and KEGG annotations are saved as flat files and in a relational postgreSQL database to allow for more sophisticated searches within the results.

For further details please see the User guide (available as PDF or Word .doc; Includes frequently asked questions and changes made to the script)

VERSION 1.1.1 corrects database creation errors arising in v1.1 due to a change in the format of files delivered from EBI.

see also annot8r_physprop, a tool for adding physical property annotations to peptides.

 



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Ancylostoma caninum

The hookworm Ancylostoma caninum.
Hookworms are gut parasites of a wide range of vertebrates, including humans. This species is a dog parasite used as a research model for human hookworm disease. See NEMBASE4 for analyses of ESTs from this parasite and many other nematodes.

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