wwwPartiGene
Image from http://www.sci.muni.cz/~paja/P6220071.jpg

Heterorhabditis bacteriophora

A web interface for the
Heterorhabditis bacteriophora PartiGene database    
Curated by Mark Blaxter


   Retrieve a specific cluster


Enter a PartiGene-style cluster ID (e.g. HBC00003)

Search the BLAST annotation

Select organism

Text      Minimum e value

To view all clusters for an organism just leave the text box blank


Data sources:

Image above from http://www.sci.muni.cz/~paja/, Dr Pavel Hyrsl's home page.

Sequences are a mix of those from Grewal et al's Dauer library, published and available on GenBank's dbEST database (~1600 sequences) and a new, unpublished set of ESTs from Ann Burnell and colleagues, Maynooth, Ireland (~700 sequences).

Clustering information:

SUMMARY OF CLUSTERING FOR HBC
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Number of sequences = 2263
Total number of clusters = 1998
Number of clusters with 1 member = 1822
Number of clusters with > 1 member
derived from 441 sequences = 176
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